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Slow Auto Configuration

Hi, I have a serious problem with RobotStudio 6.01. I have ~2200 targets in one of my programs, and RobotStudio makes the auto configuration really slow. Like a slow motion movie. It takes nearly two hours to finish with it. I tried in two different machines (an older i7 and a newer XeonE5-1620) and the speed was the same. Is there any way to speed up the auto configuration process? What am I doing wrong?